CNVkit
stable
  • Quick start
  • Copy number calling pipeline
  • Plots and graphics
  • Text and tabular reports
  • Compatibility and other I/O
  • RNA expression
  • Additional scripts
  • File formats
  • Chromosomal sex
  • Calling copy number gains and losses
  • Allele frequencies and copy number
  • Bias corrections
  • Tumor analysis
  • Tumor heterogeneity
  • Germline analysis
  • Whole-genome sequencing and targeted amplicon capture
  • cnvlib package
  • scikit-genome package
CNVkit
  • Docs »
  • Python Module Index

Python Module Index

c | s
 
c
- cnvlib
    cnvlib.access
    cnvlib.antitarget
    cnvlib.autobin
    cnvlib.batch
    cnvlib.call
    cnvlib.cmdutil
    cnvlib.cnary
    cnvlib.commands
    cnvlib.core
    cnvlib.coverage
    cnvlib.descriptives
    cnvlib.diagram
    cnvlib.export
    cnvlib.fix
    cnvlib.heatmap
    cnvlib.import_rna
    cnvlib.importers
    cnvlib.metrics
    cnvlib.parallel
    cnvlib.params
    cnvlib.plots
    cnvlib.reference
    cnvlib.reports
    cnvlib.rna
    cnvlib.samutil
    cnvlib.scatter
    cnvlib.segfilters
    cnvlib.segmentation
    cnvlib.segmetrics
    cnvlib.smoothing
    cnvlib.target
    cnvlib.vary
 
s
- skgenome
    skgenome.chromsort
    skgenome.combiners
    skgenome.gary
    skgenome.intersect
    skgenome.merge
    skgenome.rangelabel
    skgenome.subdivide
    skgenome.subtract
    skgenome.tabio

© Copyright 2014-2016, Eric Talevich. Revision fd355525.

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