CNVkit
v0.8.0
  • Quick start
  • Copy number calling pipeline
  • Plots and graphics
  • Text and tabular reports
  • Compatibility and other I/O
  • Additional scripts
  • Calling copy number gains and losses
  • Tumor analysis
  • Tumor heterogeneity
  • Germline analysis
  • Whole-genome sequencing and targeted amplicon capture
  • Gender
  • Bias corrections
  • File formats
  • Python API (cnvlib package)
CNVkit
  • Docs »
  • Overview: module code
  • Edit on GitHub

All modules for which code is available

  • cnvlib
    • cnvlib.antitarget
    • cnvlib.call
    • cnvlib.cnary
    • cnvlib.commands
    • cnvlib.core
    • cnvlib.coverage
    • cnvlib.diagram
    • cnvlib.export
    • cnvlib.fix
    • cnvlib.gary
    • cnvlib.importers
    • cnvlib.metrics
    • cnvlib.parallel
    • cnvlib.plots
    • cnvlib.reference
    • cnvlib.reports
    • cnvlib.segmentation
    • cnvlib.smoothing
    • cnvlib.target
    • cnvlib.vary

© Copyright 2014-2015, Eric Talevich. Revision ab9c400b.

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